Infectious/Non-infectious/Chronic Diseases & Pathogens

Bacteria

Bacillus anthracis (anthrax)
Francisella tularensis (tularemia)
Yersinia pestis (plague)

Viral Hemorrhagic Fevers

Arenaviruses:
Chapare Virus
Guanarito (Venezuelan hemorrhagic fever)
Junin (Argentine hemorrhagic fever)
Lassa
Lujo
Machupo

Bunyaviruses:
Crimean Congo hemorrhagic fever
Hantaviruses – includes Marporal viruses (hanta pulmonary syndrome)
Rift Valley fever

Filoviruses:
Ebola
Marburg

Flavivirus:
Dengue

Bacteria

Brucella spp. (bucellosis)
Burkholderia mallei (ganders)
Burkholderia pseudomallei (melioidosis)
Rickettsia prowzekii (typhus fever)
Staphylococcus aureus (Staphylococcus enterotoxin B – food poisoning)

Viruses

California encephalitis
Eastern equine encephalitis
Japanese encephalitis
La Crosse encephalitis
St. Louis encephalitis
Venezuela equine encephalitis
West Nile
Western equine encephalitis

Food-/Waterborne Pathogens

Bacteria:

Diarrheagenic Escherichia coli
Pathogenic Vibrio spp.
Shigella spp.
Salmonella spp.
St. Louis encephalitis
Yersinia enterocolitica (yersiniosis)

Bacteria

Mycobacterium tuberculosis (tuberculosis – including multi-drug-resistant TB)

Other Rickettsia spp.

Emerging Infectious Diseases

Viruses:
Hendra
Nipah

Neurodegenerative Diseases

Prions (transmissible spongiform encephalopathies)

Viruses

Bunyaviruses:
Heartland
Severe fever with thrombocytopenia

Coronaviruses:
Middle East respiratory syndrome coronavirus (MER-CoV)
Severe acute respiratory syndrome associated coronaviruses (SARS-CoV)
Other highly pathogenic human oronaviruses

Flaviviruses:
Alkhurma
Kyasanur Forest
Omsk hemorrhagic fever

Tick-borne encephalitis viruses:
Central European
Far Eastern
Powassan/deer tick virus
Siberian subtype

Chikungunya
Influenza
Rabies
Yellow fever